Publications
Lee YS, Malhotra A, Sun D, Kim HK,
Matecic M, Evans C, Dutta A, “miRNAs in the
androgen-independence and androgen regulation of prostate epithelial
cell lines”, Communicated
Karnani N, Taylor CM, Malhotra A, Dutta
A, “High-throughput mapping of nascent DNA to identify
efficient origins of DNA replication in human chromosomes”,
Communicated
Lee YS*, Shibata Y*, Malhotra
A, Dutta A,
“A novel class of small RNAs, tRNA-derived RNA fragments (tRFs), is
highly expressed in proliferating cells and required for cell
proliferation”, Accepted, Genes and Development (* co-first authors)
Shibata Y*, Malhotra A*, Dutta A, “Yeast
genome analysis by ChromPET technology identifies sites of
translocation and several sites of Ty element insertion”,
Accepted, Nucleic Acids Research
(* co-first authors)
Dutta A, Karnani N, Malhotra A, Robins G,
Taylor CM. “Extraction of Human DNA Replication Timing
Patterns from Discrete Microarray Data”, 3rd IAPR
International Conference on Pattern Recognition in Bioinformatics (PRIB
2008), Melbourne, Australia, October 2008.
Karnani N, Taylor CM, Malhotra A, Dutta
A. “Pan-s replication patterns and chromosomal domains
defined by genome-tiling arrays of ENCODE genomic areas”.
Genome Res. 2007 Jun;17(6):865-76.
The ENCODE consortium. “Identification and analysis of
functional elements in 1% of the human genome by the ENCODE pilot
project”, Nature. 2007 Jun 14; 447(7146):799-816
(Article was featured on the cover page)
(I was one of the two bioinformaticians from UVA)
Kim HK, Lee YS, Sivaprasad U, Malhotra A,
Dutta A, “Muscle-specific microRNA miR-206 promotes muscle
differentiation”, Journal of Cell Biology, 2006; 174, 677-687
(Article was featured on the cover page)
Machida Y, Chen Y, Malhotra A, Machida Y,
Dutta A,“Targeted Comparative RNAi (TARCOR) Analysis Reveals
Differential Requirement of Genes Essential for Cell Proliferation”,
Mol Biol Cell. 2006 Nov;17(11):4837-45
Bedi P, Kaur H, Malhotra A, “Fuzzy
Dimension to Databases”, 37th National Convention of
Computer Society of India, Bangalore, India, 2002, Nov